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372    Chapter 11    Analyzing Genomic Variation


              Figure 11.10  PCR amplification of a target sequence. In the first PCR cycle of this example, a single molecule of double-stranded
              genomic DNA is heated to denature it into single strands. The temperature is then lowered to allow these single strands to hybridize with the
              two PCR primers. A heat-stable DNA polymerase now polymerizes new DNA onto the 3′ ends of each primer. In the second PCR cycle, the
              DNA in the reaction tube is denatured and then hybridized to the same primers. Both the original DNA strands and those made in the first
              cycle serve as templates in the second round. Each cycle of PCR thus doubles the amount of DNA in the target region. After the conclusion
              of the third round of PCR, the 5′ ends of the majority of template strands are defined by the 5′ ends of the primers, fixing the length of the
              accumulating PCR product.
                PCR cycle 1:
                                                 5'                           3'    5'                           3'
                5'                          3'

                3'                          5'
                                                 3'                           5'    3'                           5'
                      (1) Denature strands             (2) Base pairing of primers  (3) Polymerization from primers along templates
                PCR cycle 2:
                                                 5'                           3'    5'                           3'
                5'                          3'

                                                                                    5'
                3'                          5'
                                                 3'                           5'    3'                           5'

                                                 5'                           3'    5'                           3'
                5'                          3'

                3'                          5'
                                                 3'                           5'    3'                           5'
                      (1) Denature strands             (2) Base pairing of primers  (3) Polymerization from primers along templates

                Exponential amplification
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