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212    Chapter 6    DNA Structure, Replication, and Recombination


                  Because CRISPR/Cas9 causes double- strand breaks at a
              specific genomic location determined by the sequence of the   essential concepts
              CRISPR RNA, researchers can now induce recombination   •  Site-specific recombination is crossing-over between two
              to occur at high frequency at any specific location of the   short DNA target sites catalyzed by a recombinase enzyme.
              genome. As will be seen in Chapter 18, this recombination   •  Researchers can import target sites and the
              allows scientists to alter the sequence of DNA near the   corresponding recombinase gene into an organism’s
              breakpoint in any desired way. The potential significance   genome to promote site-specific recombination at a
              of this newfound ability to alter genomes is staggering. Just   particular genomic location, at a particular time, and in a
              to cite one example, such pinpoint genome editing may al-  particular tissue.
              low for  gene therapy in which mutant alleles in the ge-  •  The CRISPR/Cas9 system can induce double-strand
              nomes of the somatic cells of a person suffering from a   breaks at almost any position in the genome. The fact that
              genetic disease such as cystic fibrosis could be changed to   these double-strand breaks are recombinogenic allows
              wild-type alleles.                                       scientists to edit genomes in the vicinity of the breakage.






                             WHAT’S NEXT


              The Watson-Crick model for the structure of DNA, the   different proteins, replication and recombination both oc-
              single most important biological discovery of the twentieth   cur with extremely high fidelity—normally not a single
              century, clarified how the genetic material fulfills its pri-  base pair is gained or lost. Occasionally, however, errors do
              mary functions of carrying and accurately reproducing in-  occur, providing the genetic basis of evolution.
              formation: Each DNA molecule carries one of a vast       DNA copying or recombination errors that occur
              number of potential arrangements of the four nucleotide   within genes sometimes produce dramatic changes in
              building blocks (A, T, G, and C). The model also suggested   phenotype. How do mutations in genes arise? And how
              how base complementarity could provide a mechanism for   did we come to understand that different alleles of genes
              faithful DNA replication. We have further seen how the   produce their phenotypic effects through the proteins that
              structure of DNA enables the recombining of genetic infor-  they specify?
              mation from maternal and paternal chromosomes.           We begin to answer these questions in Chapter 7. We
                  Unlike its ability to carry information, DNA’s capaci-  first describe the molecular processes that lead to mutation.
              ties for replication and recombination are not solely prop-  Next, you will see that scientists used mutations to deter-
              erties of the DNA molecule itself. Rather they depend on   mine what a gene actually is—a linear sequence of base
              the cell’s complex enzymatic machinery. But even though   pairs in DNA, and what a gene does—it encodes the infor-
              they rely on the complicated orchestration of many   mation for producing a protein.





                             SOLVED PROBLEMS


                                 5′ TAAGCGTAACCCGCTAA   CGTATGCGAAC    GGGTCCTATTAACGTGCGTACAC 3′
                                 3′ ATTCGCATTGGGCGATT   GCATACGCTTG    CCCAGGATAATTGCACGCATGTG 5′


                I.  Imagine that the double-stranded DNA molecule   Answer
                  shown was broken at the sites indicated by spaces in   To answer this question, you need to keep in mind the po-
                  the sequence, and that before the breaks were re-  larity of the DNA strands involved.
                  paired, the 11 base pair DNA fragment between the    The top strand has the polarity left to right of 5′ to 3′.
                  breaks was reversed (inverted). What would be the   The reversed region must be rejoined with the same polarity.
                  base  sequence of the repaired molecule?  Explain your   Label the polarity of the strands within the inverting region.
                    reasoning.                                     To have a 5′-to-3′ polarity maintained on the top strand, the
              DNA: © Design Pics/Bilderbuch RF
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