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226    Chapter 7    Anatomy and Function of a Gene: Dissection Through Mutation


              section of this chapter will discuss various biochemical path-  backbone occurs 1000 times an hour in every human
              ways that biological systems have evolved to minimize the   cell. This kind of DNA alteration is called depurination
              mutagenic consequences of these DNA alterations.     (Fig. 7.8a).  Because the resulting  apurinic site cannot
                                                                   specify a complementary base, the DNA replication pro-
                                                                   cess introduces a random base opposite the apurinic site,
              Natural Processes Cause Spontaneous                  causing a mutation in the newly synthesized complemen-
              Mutations Through DNA Damage                         tary strand three-quarters of the time.
                                                                       Another naturally occurring process that may mod-
              Chemical and physical assaults on DNA are quite frequent.   ify DNA’s information content is deamination: the re-
              Geneticists estimate, for example, that the hydrolysis of    moval of an amino (–NH 2 ) group. Deamination can
              a purine base, A or G, from the deoxyribose-phosphate   change cytosine (C) to uracil (U), the nitrogenous base


              Figure 7.8  How natural processes can change the information stored in DNA. (a) In depurination, the hydrolysis of A or G
              bases leaves a DNA strand with an unspecified base. (b) In deamination, the removal of an amino group from C initiates a process that
              causes a transition after DNA replication. (c) X-rays break the sugar-phosphate backbone and thereby split a DNA molecule into smaller
              pieces, which may be ligated back together improperly. (d) Ultraviolet (UV) radiation causes adjacent Ts to form dimers, which can disrupt the
              readout of genetic information. (e) Irradiation causes the formation of free radicals (such as oxygen molecules with an unpaired electron) that
              can alter individual bases. Here, the pairing of the altered base GO with A creates a transversion that changes a G–C base pair to T–A.
              (a)  Depurination                                    (b)  Deamination
                                                                                                 Normal sequence
                                                                    Amino group                        C
                  P       T            P       T                      H   H                            G
                                                                        N            O
                                                       Apurinic     H            H       H               Deamination
                                                       site               N            N               U
                                                                                                       G
                      P                    P                        H   N   O    H   N   O
                                                   OH                                                     Replication
                              Guanine                 +              Cytosine      Uracil        U            C
                                                          H                                      A            G
                                                           Guanine                                 Replication
                         P       C            P        C   released
                                                                                          T            U
                                                                                          A            A
                                                                                    Mutant sequence


              (c)  X-rays break the DNA backbone                   (d)  UV light produces thymine dimers
                                                                                                   Thymine dimer
                                                                                     UV light
                                                                            T     T
                    X ray

                                                    Deletion       Sugar-phosphate backbone

                                                                                                      O       O
                                                                                                       CH 3  H C
                                                                                                           3
                                                                                                 H  C         C    H
                                                                                                  N    C    C   N
                                                                                                  C    C    C   C
              (e)  Oxidation                                                                     O  N         N    O
                              Active                              Normal sequence                      H    H
                      O                 H     O
                              oxygen                                    G
                  N       H   species    N        H                     C                            Thymine dimer
                        N                      N
              H                       O                                  Oxidative damage
                             H                      H
                  N   N   N               N   N   N                     GO
                                                                        C
                          H                       H
                 Guanine
                                          8-oxodG                          Replication
                                             (GO)
                                                                 GO           G
                                                                 A            C
                                                            Mispairing with A
                                                                    Replication
                                                           T           GO
                                                           A            A
                                                     Mutant sequence
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