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PART II  What Genes Are and What They Do
                                7

                       chapter



                                       Anatomy and



                        Function of a Gene:


                        Dissection Through

                                                                            A scale played on a piano keyboard and a gene on a chromosome
                                                   Mutation                 are both a series of simple, linear elements (keys or nucleotide
                                                                            pairs) that produce information. A wrong note or an altered
                                                                              nucleotide pair calls attention to the structure of the musical
                                                                            scale or the gene.
                                                                            © Ingram Publishing RF

                                                                            chapter outline

                                                                            •   7.1 Mutations: Primary Tools of Genetic Analysis
                                                                            •   7.2  Molecular Mechanisms That Alter DNA
                                                                                  Sequence
                                                                            •   7.3 DNA Repair Mechanisms
                       HUMAN CHROMOSOME 3 CONSISTS of approximately         •   7.4 What Mutations Tell Us About Gene Structure
                       220 million base pairs and carries about 1600 genes    •     7.5 What Mutations Tell Us About Gene Function
                       (Fig. 7.1). Somewhere on the long arm of the chromosome   •     7.6  A Comprehensive Example: Mutations That
                       resides the gene for rhodopsin, a light-sensitive protein   Affect Vision
                       active in the rod cells of our retinas. The rhodopsin gene
                       determines perception of low-intensity light. People who
                       carry the normal, wild-type allele of the gene see well in
                       a dimly lit room and on the road at night. One simple change—a mutation—in the
                       rhodopsin gene, however, diminishes light perception just enough to lead to night
                       blindness. Other alterations in the gene cause the destruction of rod cells, resulting
                       in total blindness. Medical researchers have so far identified more than 30 mutations
                       in the rhodopsin gene that affect vision in different ways.
                          The case of the rhodopsin gene illustrates some very basic questions. Which of the
                       220  million  base  pairs  on  chromosome  3  make  up  the  rhodopsin  gene?  How  are
                       the base pairs that constitute this gene arranged along the chromosome? How can a
                       single gene sustain so many mutations that lead to such divergent phenotypic effects?
                       In this chapter, we describe the ingenious experiments performed by geneticists during
                       the 1950s and 1960s as they examined the relationships among mutations, genes, chro-
                       mosomes, and phenotypes in an effort to understand, at the molecular level, what genes
                       are and how they function.
                          We can recognize three main themes from the elegant work of these investigators.
                       The first is that mutations are heritable changes in base sequence that can affect pheno-
                       type. The second is that physically, a gene is usually a specific protein-encoding seg-
                       ment of DNA in a discrete region of a chromosome. (We now know that some genes
                       encode various kinds of RNA that do not get translated into protein.) Third, a gene is not
                       simply a bead on a string, changeable only as a whole and only in one way, as some had
                       thought. Rather, genes are divisible, and each gene’s subunits—the individual nucleo-
                       tide pairs of DNA—can mutate independently and can recombine with each other.
                          Knowledge of what genes are and how they work deepens our understanding of
                       Mendelian genetics by providing a biochemical explanation for how genotype

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