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220    Chapter 7    Anatomy and Function of a Gene: Dissection Through Mutation


                                                 Figure 7.1  The DNA of each human chromosome contains hundreds to
                                                 thousands of genes. The DNA of this human chromosome has been spread out and
                                                 magnified 50,000×. No topological signs reveal where along the DNA the genes reside.
                                                 The darker, chromosome-shaped structure in the middle is a scaffold of proteins to which
                                                 the DNA is attached.
                                                 © Dr. Don Fawcett/J.R. Paulson & U.K. Laemmli/Science Source






                                                   influences phenotype. One mutation in the rhodopsin gene, for example, causes
                                                 the substitution of one particular amino acid for another in the construction of
                                                 the rhodopsin protein. This single substitution changes the three-dimensional
                                                 structure of rhodopsin and thus the protein’s ability to absorb photons, ultimately
                                                 altering a person’s ability to perceive light.







               7.1   Mutations: Primary Tools                      mutation. The resulting novel mutant allele can be either
              of Genetic Analysis                                  recessive or dominant to the original wild-type allele.
                                                                                                               +
                                                                     Geneticists often diagram forward  mutations as  A →  a
                                                                   when the mutation is recessive to the wild-type allele, and
                                                                      +
                                                                   as b → B when the mutation is dominant to the wild-type.
                learning objectives                                Mutations can also cause a novel mutant allele to revert
                                                                                                  +
                                                                                        +
                1.  Distinguish between the effects of mutation in somatic   back to wild type (a → A , or B → b ) in a process known
                   and germ-line cells.                            as reverse mutation, or reversion. In this chapter, we des-
                2.  Describe four types of point mutations: transitions,   ignate wild-type alleles, whether recessive or dominant to
                                                                                              +
                   transversions, deletions, and insertions.       mutant alleles, with a plus sign ( ).
                3.  Summarize the factors associated with differences in   Mendel originally defined genes by the visible pheno-
                   mutation rate.                                  typic effects—yellow or green, round or wrinkled—of
                4.  Explain how the fluctuation test and replica plating have   their alternative alleles. In fact, the only way he knew that
                   shown that mutations arise randomly and         genes existed at all was because alternative alleles for
                   spontaneously.                                  seven particular pea genes had arisen through forward
                                                                     mutations. Mutations can occur in somatic cells or in
                                                                   germ-line cells. The mutations in Mendel’s pea plants
              We saw in Chapter 3 that genes with one common allele are   were heritable because they occurred in the germ-line
              monomorphic, while genes with several common alleles in   cells of the plants and were thus transmitted through
              natural populations are polymorphic. The term wild-type     gametes. Close to a century later, knowledge of DNA
              allele has a clear definition for monomorphic genes, where   structure clarified that such mutations are heritable
              the allele found on the large majority of chromosomes in    changes in DNA base sequence. DNA thus carries the
              the population under consideration is wild type. In the case     potential for genetic change in the same place it carries
              of polymorphic genes, the definition is less straightforward.   genetic information—the sequence of its bases.
              Some geneticists consider all alleles with a frequency of
              greater than 1% to be wild type, while others describe the
              many alleles present at appreciable frequencies in the popu-  Mutations May Be Classified
              lation as common variants and reserve wild-type allele for   by How They Change DNA
              use only in connection with monomorphic genes.
                                                                   A substitution occurs when a base at a certain position in
              Mutations Are Changes in DNA                         one strand of the DNA molecule is replaced by one of the
              Base Sequences                                       other three bases (Fig. 7.2a); after DNA replication, a new
                                                                   base pair will appear in the daughter double helix. Substi-
              A mutation that changes a wild-type allele of a gene (regard-  tutions can be subdivided into  transitions, in which one
              less of the definition) to a different allele is called a forward   purine (A or G) replaces the other purine or one pyrimidine
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