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298    Chapter 8    Gene Expression: The Flow of Information from DNA to RNA to Protein



                   TABLE 8.1    Differences Between Prokaryotes and Eukaryotes in the Details of Gene Expression
                                             Prokaryotes                                  Eukaryotes
                Overview    1.   No nucleus. Transcription and translation take place in    1.   Nucleus separated from the cytoplasm by a nuclear
                              the same cellular compartments, and translation is often   membrane. Transcription takes place in the nucleus,
                              coupled to transcription.                    while translation occurs in the cytoplasm. Direct
                                                                           coupling of transcription and translation is not possible.
                                                           Ribosome
                                   Cell                    Protein                Cell
                                   without                 product                with
                                   nucleus                                        nucleus
                                                            mRNA


                                   DNA          RNA polymerase                    Transcription     Translation
                            2.  Genes are not divided into exons and introns.  2.   The DNA of a gene consists of exons separated by
                                                                           introns; the exons are defined by posttranscriptional
                                               Gene                        splicing, which deletes the introns.
                                                                                             Gene


                                                                                        Intron  Exon

                Transcription  1.  One RNA polymerase consisting of five subunits.   1.  Several kinds of RNA polymerase, each containing 10 or
                                                                           more subunits; different polymerases transcribe different
                                                                           genes.
                            2.   DNA sequences needed for transcription initiation are   2.  Enhancer sequences far from the promoter are often
                              located close to the promoter.               needed for transcription initiation.
                            3.  Promoters are not wound up in chromatin.   3.  Transcription initiation requires promoters to be cleared
                                                                           of chromatin to allow access to RNA polymerase.

                                       Promoter free of nucleosomes              Nucleosome      Promoter




                            4.   Primary transcripts are the actual mRNAs; they have    4.   Primary transcripts undergo processing to produce
                              a triphosphate start at the 5′ end and no tail at the    mature mRNAs that have a methylated cap at the 5′ end
                              3′ end.                                      and a poly-A tail at the 3′ end.
                                          5'           3'
                                                                                     5'           AAAAAA  3'

                Translation  1.  Unique initiator tRNA carries formylmethionine.   1.  Initiator tRNA carries methionine.
                            2.   mRNAs have multiple ribosome binding sites (RBSs) and can   2.  mRNAs have only one start site and can thus direct the
                              thus direct the synthesis of several different polypeptides.   synthesis of only one kind of polypeptide.

                                           AUG   STOP AUG  STOP                         AUG      STOP
                                                                                                     AAAAAA  3'
                                                              3'                  5'
                                      5'                                                    Gene 1
                                          RBS  Gene 1  RBS  Gene 2                   5' UTR       3' UTR
                            3.  Small ribosomal subunit immediately binds to the mRNA’s   3.  Small ribosomal subunit binds first to the methylated cap
                              ribosome binding site.                       at the 5′ end of the mature mRNA and then scans the
                                                                           mRNA to find the ribosome binding site.
                                            AUG   STOP  AUG  STOP
                                                               3'                        AUG     STOP
                                      5'
                                           RBS        RBS                                           AAAAAA
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